The marine middle Burdigalian sediments of the North Alpine Foreland Basin (NAFB) or Molasse Basin are well known for abundant occurrences of benthic foraminifers and ostracods. However, taxonomic studies of ostracod assemblages are comparatively rare and, given its abundance, the group remains heavily understudied. Here we report a new, rich and well-preserved ostracod fauna from the middle Burdigalian Neuhofen Formation at Mitterdorf, in the northeastern part of the NAFB. The material comprises a total of 3029 ostracod specimens. We identified 44 species; all species are described and, with one exception, illustrated. Our material reveals the presence of 17 ostracod species that were previously unknown from the middle Burdigalian in the NAFB, i.e., Cytherella aff. vulgatella, Cytherella aff. méhesi, Bairdoppilata aff. subdeltoidea, Paranesidea? sp., Paracypris aff. aerodynamica, Parakrithe dactylomorpha, Pseudopsammocythere sp., Callistocythere daedalea, Costa aff. reticulata, Ruggieria aff. longecarenata, Heliocythere aff. vejhonensis, Heliocythere sp., Loxocorniculum hastatum, Neocytherideis cypria, Cytheretta cf. tenuipunctata dentata, Cytheropteron cf. ruggierii, and Semicytherura resecta. The palaeobiogeography of the ostracods indicates a relatively open marine Burdigalian connection between the NAFB and the Mediterranean Sea, in agreement with previous work. Our data also suggest that a significant degree of endemism existed in the middle Burdigalian sea of the NAFB, of which previous studies yielded only sparse signs. Moreover, our results indicate that some ostracod species survived the late Burdigalian sea retreat from the NAFB by dispersing eastward into the adjacent regions (Vienna Basin, Carpathian Foredeep), where marine conditions still prevailed. A compilation of all known middle Burdigalian ostracod faunas from the NAFB documents a high species diversity, with over 120 species. Their spatial distribution, with many species being restricted to a single site, suggests heterogenous microhabitats, possibly influenced by small-scale differences in water depth, nutrient availability and oxygenation.