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Biological exacerbation clusters demonstrate asthma and chronic obstructive pulmonary disease overlap with distinct mediator and microbiome profiles - 06/06/18

Doi : 10.1016/j.jaci.2018.04.013 
Michael A. Ghebre, PhD a, , §, Pee Hwee Pang, MBBS b, , Sarah Diver, MBChB a, , Dhananjay Desai, PhD a, Mona Bafadhel, PhD c, Koirobi Haldar, PhD a, Tatiana Kebadze, MD d, Suzanne Cohen, PhD e, Paul Newbold, PhD e, Laura Rapley, PhD e, Joanne Woods, PhD e, Paul Rugman, PhD e, Ian D. Pavord, MD c, Sebastian L. Johnston, PhD d, Michael Barer, PhD a, Richard D. May, PhD e, , #, Christopher E. Brightling, PhD a, ,
a Institute for Lung Health, NIHR Leicester Biomedical Research Centre, Department of Infection, Immunity & Inflammation, University of Leicester and University Hospitals of Leicester NHS Trust, Leicester, United Kingdom 
b Department of Respiratory and Critical Care Medicine, Tan Tock Seng Hospital, Singapore 
c Respiratory Medicine Unit, Nuffield Department of Medicine, NDM Research Building, Old Road Campus, University of Oxford, Oxford, United Kingdom 
d National Heart and Lung Institute and MRC & Asthma UK Centre in Allergic Mechanisms of Asthma, Imperial College London, London, United Kingdom 
e MedImmune, Cambridge, United Kingdom 

Corresponding author: Christopher E. Brightling, PhD, Institute for Lung Health, University Hospitals of Leicester, Groby Road, Leicester LE3 9QP, United Kingdom.Institute for Lung HealthUniversity Hospitals of LeicesterGroby RoadLeicesterLE3 9QPUnited Kingdom

Abstract

Background

Exacerbations of asthma and chronic obstructive pulmonary disease (COPD) are heterogeneous.

Objective

We sought to investigate the sputum cellular, mediator, and microbiome profiles of both asthma and COPD exacerbations.

Methods

Patients with severe asthma or moderate-to-severe COPD were recruited prospectively to a single center. Sputum mediators were available in 32 asthmatic patients and 73 patients with COPD assessed at exacerbation. Biologic clusters were determined by using factor and cluster analyses on a panel of sputum mediators. Patterns of clinical parameters, sputum mediators, and microbiome communities were assessed across the identified clusters.

Results

The asthmatic patients and patients with COPD had different clinical characteristics and inflammatory profiles but similar microbial ecology. Three exacerbation biologic clusters were identified. Cluster 1 was COPD predominant, with 27 patients with COPD and 7 asthmatic patients exhibiting increased blood and sputum neutrophil counts, proinflammatory mediators (IL-1β, IL-6, IL-6 receptor, TNF-α, TNF receptors 1 and 2, and vascular endothelial growth factor), and proportions of the bacterial phylum Proteobacteria. Cluster 2 had 10 asthmatic patients and 17 patients with COPD with increased blood and sputum eosinophil counts, type 2 mediators (IL-5, IL-13, CCL13, CCL17, and CCL26), and proportions of the bacterial phylum Bacteroidetes. Cluster 3 had 15 asthmatic patients and 29 patients with COPD with increased type 1 mediators (CXCL10, CXCL11, and IFN-γ) and proportions of the phyla Actinobacteria and Firmicutes.

Conclusions

A biologic clustering approach revealed 3 subgroups of asthma and COPD exacerbations, each with different percentages of patients with overlapping asthma and COPD. The sputum mediator and microbiome profiles were distinct between clusters.

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Graphical abstract




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Key words : Asthma, chronic obstructive pulmonary disease, asthma and chronic obstructive pulmonary disease heterogeneity, inflammatory profiles, microbiome abundances, phylum and genus levels, factor and cluster analyses

Abbreviation used : COPD, IL-6R, P/F ratio, T1, T2, TNF-R, VAS, VEGF


Plan


 Supported by MedImmune and a Wellcome Trust Senior Fellowship (to C.E.B.). The research was performed in laboratories funded in part by the European Regional Development Fund (ERDF 05567). This study was also part supported by the Medical Research Council; the National Institute for Health Research (NIHR) Leicester Biomedical Research Centre, United Kingdom; and AirPROM (FP7-270194). S.L.J. was supported by the Asthma UK Clinical Chair (CH11SJ) and an MRC Centre grant (no. G1000758). The views expressed are those of the author or authors and not necessarily those of the National Health Service, the NIHR, or the Department of Health.
 Disclosure of potential conflict of interest: P. H. Pang reports personal fees from Teva UK Limited outside the submitted work. D. Desai reports personal fees from AstraZeneca, Boehringer Ingelheim, and Chiesi outside the submitted work. M. Bafadhel reports personal fees from AstraZeneca, Boehringer Ingelheim, Chiesi, GlaxoSmithKline, Novartis, and Pfizer outside the submitted work. S. Cohen, P. Newbold, L. Rapley, J. Woods, and P. Rugman are employees of MedImmune, which supported the study. I. D. Pavord reports personal fees and nonfinancial support from AstraZeneca and Boehringer Ingelheim and personal fees from Aerocrine, Almirall, Novartis, GlaxoSmithKline, Genentech, Regeneron, Merck & Co, Schering-Plough, Mylan Specialty (Dey Pharma), Napp Pharmaceuticals and Respivert outside the submitted work. S. L. Johnston reports grants/personal fees from Apollo Therapeutics, AstraZeneca, Boehringer Ingelheim, Bioforce, Chiesi, Genentech, GlaxoSmithKline, Merck, Novartis, Sanofi/Regeneron, Synairgen, and Therapeutic Frontiers; is a director of Therapeutic Frontiers; and holds patents on the use of inhaled interferons as treatments for exacerbations of airway disease outside the submitted work. R. D. May is a former employee of MedImmune, which supported the study. C. E. Brightling has received grants and personal fees paid to his institution from MedImmune (AstraZeneca), GlaxoSmithKline, Roche/Genentech, Novartis, Chiesi, Pfizer, Teva, Sanofi/Regeneron, Glenmark, Mologic, PreP, and Vectura, outside the submitted work. The rest of the authors declare that they have no relevant conflicts of interest.


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